Publications
# 2022
Agamah F.E., Bayjanov J.R., Niehues A., Njoku K.F., Skelton M., Mazandu G.K., Ederveen T.H.A., Mulder N., Chimusa E.R., 't Hoen P.A.C.,
Computational approaches for network-based integrative multi-omics analysis.
Front Mol Biosci, Nov;9:967205
Niehues H.*, van der Krieken D.A.*, Ederveen T.H.A.*, Jansen P.A.M., van Niftrik L., Mesman R., Netea M.G., Smits J.P.H., Schalkwijk J., van den Bogaard E.H., Zeeuwen P.L.J.M.,
Antimicrobial Late Cornified Envelope Proteins: The Psoriasis Risk Factor Deletion of LCE3B/C Genes Affects Microbiota Composition.
J Invest Dermatol, Jul;142(7):1947-1955
Guzzardi M.A.*, Ederveen T.H.A.*, Rizzo F., Weisz A., Collado M.C., Muratori F., Gross G., Alkema W., Iozzo P.,
Maternal pre-pregnancy overweight and neonatal gut bacterial colonization are associated with cognitive development and gut microbiota composition in pre-school-age offspring.
Brain Behav Immun, Feb;100:311-320
# 2021
Andralojc K.M., Molina M.A., Qiu M., Spruijtenburg B., Rasing M., Pater B., Huynen M.A., Dutilh B.E., Ederveen T.H.A., Elmelik D., Siebers A.G., Loopik D., Bekkers R.L.M., Leenders W.P.J., Melchers W.J.G.,
Novel high-resolution targeted sequencing of the cervicovaginal microbiome.
BMC Biol, Dec;19(1):267
Hartog G.D.*, Ederveen T.H.A.*, Venkatasubramanian P.B.*, Ferwerda G., van den Kieboom C.H., van der Gaast-de Jongh C.E., Vissers M., Zoll J., Melchers W.J.G., Huynen M.A., Rots N., Rahamat-Langendoen J., de Jonge M.I.,
Chemokine profiling in children and adults with symptomatic and asymptomatic respiratory viral infections.
J Infect, Dec;83(6):709-737
Voorberg A.N., Niehues H., Oosterhaven J.A.F., Romeijn G.L.E., van Vlijmen-Willems I.M.J.J., van Erp P.E.J., Ederveen T.H.A., Zeeuwen P.L.J.M., Schuttelaar M.L.A.,
Vesicular hand eczema transcriptome analysis provides insights into its pathophysiology.
Exp Dermatol, Dec;30(12):1775-1786
Arends D.W., Miellet W.R., Langereis J.D., Ederveen T.H.A., van der Gaast-de Jongh C.E., van Scherpenzeel M., Knol M.J., van Sorge N.M., Lefeber D.J., Trzciński K., Sanders E.A.M., Dorfmueller H.C., Bootsma H.J., de Jonge M.I.,
Examining the distribution and impact of single nucleotide polymorphisms in the capsular locus of Streptococcus pneumoniae serotype 19A.
Infect Immun, Oct;89(11):e0024621
# 2020
van Beek L.F., Surmann K., van den Berg van Saparoea H.B., Houben D., Jong W.S.P., Hentschker C., Ederveen T.H.A., Mitsi E., Ferreira D.M., van Opzeeland F., van der Gaast-de Jongh C.E., Joosten I., Völker U., Schmidt F., Luirink J., Diavatopoulos D.A., de Jonge M.I.,
Exploring metal availability in the natural niche of Streptococcus pneumoniae to discover potential vaccine antigens.
Virulence, Dec;11(1):1310-1328
Ederveen T.H.A.*, Smits J.P.H.*, Boekhorst J., Schalkwijk J., van den Bogaard E.H., Zeeuwen P.L.J.M.,
Skin microbiota in health and disease: From sequencing to biology.
J Dermatol, Oct;47(10):1110-1118
Voß F., van Beek L.F., Schwudke D., Ederveen T.H.A., van Opzeeland F.J., Thalheim D., Werner S., de Jonge M.I., Hammerschmidt S.,
Lipidation of Pneumococcal Antigens Leads to Improved Immunogenicity and Protection.
Vaccines, Jun;8(2):310
Smits J.P.H.*, Ederveen T.H.A.*, Rikken G., van den Brink N.J.M., van Vlijmen-Willems I.M.J.J., Boekhorst J., Kamsteeg M., Schalkwijk J., van Hijum S.A.F.T., Zeeuwen P.L.J.M., van den Bogaard E.H.,
TARgeting the cutaneous microbiota in atopic dermatitis by coal tar via AHR-dependent induction of antimicrobial peptides.
J Invest Dermatol, Feb;140(2):415-424
# 2019
Ederveen T.H.A., Smits J.P.H., Hajo K., van Schalkwijk S., Kouwenhoven T.A., Lukovac S., Wels M., van den Bogaard E.H., Schalkwijk J., Boekhorst J., Zeeuwen P.L.J.M., van Hijum S.A.F.T.,
A generic workflow for Single Locus Sequence Typing (SLST) design and subspecies characterization of microbiota.
Sci Rep, Dec;9(1):19834
Gommers L.M.M., Ederveen T.H.A., van der Wijst J., Overmars-Bos C., Kortman G.A.M., Boekhorst J., Bindels R.J.M., de Baaij J.H.F., Hoenderop J.G.J.,
Low gut microbiota diversity and dietary magnesium intake are associated with the development of PPI-induced hypomagnesemia.
FASEB J, Oct;33(10):11235-11246
Rogier R., Ederveen T.H.A., Wopereis H., Hartog A., Boekhorst J., van Hijum S.A.F.T., Knol J., Garssen J., Walgreen B., Helsen M.M., van der Kraan P.M., van Lent P.L.E.M., van de Loo F.A.J., Abdollahi-Roodsaz S., Koenders M.I.,
Supplementation of diet with non-digestible oligosaccharides alters the intestinal microbiota, but not arthritis development, in IL-1 receptor antagonist deficient mice.
PLoS One, Jul;14(7):e0219366
Chermprapai S., Ederveen T.H.A., Broere F., Broens E.M., Schlotter Y.M., van Schalkwijk S., Boekhorst J., van Hijum S.A.F.T., Rutten V.P.M.G.,
The bacterial and fungal microbiome of the skin of healthy dogs and dogs with atopic dermatitis and the impact of topical antimicrobial therapy, an exploratory study.
Vet Microbiol, Feb;229:90-99
# 2018
Ederveen T.H.A.*, Ferwerda G.*, Ahout I.M., Vissers M., de Groot R., Boekhorst J., Timmerman H.M., Huynen M.A., van Hijum S.A.F.T.*, de Jonge M.I.*,
Haemophilus is overrepresented in the nasopharynx of infants hospitalized with RSV infection and associated with increased viral load and enhanced mucosal CXCL8 responses.
Microbiome, Jan;6(1):10
# 2017
Aarts E.*, Ederveen T.H.A.*, Naaijen J., Zwiers M.P., Boekhorst J., Timmerman H.M., Smeekens S.P., Netea M.G., Buitelaar J.K., Franke B., van Hijum S.A.F.T.*, Arias Vasquez A.*,
Gut microbiome in ADHD and its relation to neural reward anticipation.
PLoS One, Sep;12(9):e0183509
Rogier R.*, Ederveen T.H.A.*, Boekhorst J., Wopereis H., Scher J.U., Manasson J., Frambach S.J.C.M., Knol J., Garssen J., van der Kraan P.M., Koenders M.I., van den Berg W.B., van Hijum S.A.F.T., Abdollahi-Roodsaz S.,
Aberrant intestinal microbiota due to IL-1 receptor antagonist deficiency promotes IL-17- and TLR4-dependent arthritis.
Microbiome, Jun;5(1):63
Zeeuwen P.L., Boekhorst J., Ederveen T.H.A., Kleerebezem M., Schalkwijk J., van Hijum S.A.F.T., Timmerman H.M.,
Reply to Meisel et al. : Skin microbiome surveys are strongly influenced by experimental design.
J Invest Dermatol, Apr;137(4):961-962
Zeeuwen P.L.*, Ederveen T.H.A.*, van der Krieken D.A.*, Niehues H.*, Boekhorst J., Kezic S., Hanssen D.A., Otero M.E., van Vlijmen-Willems I.M., Rodijk-Olthuis D., Falcone D., van den Bogaard E.H., Kamsteeg M., de Koning H.D., Zeeuwen-Franssen M.E., van Steensel M.A., Kleerebezem M., Timmerman H.M., van Hijum S.A.F.T., Schalkwijk J.,
Gram-Positive
Anaerobe Cocci (GPAC) are Underrepresented in the Microbiome of Filaggrin-Deficient Human Skin.
J Allergy Clin Immunol, Apr;139(4):1368-1371
# 2016
van der Krieken D.A.*, Ederveen T.H.A.*, van Hijum S.A.F.T., Jansen P.A., Melchers W.J., Scheepers P.T., Schalkwijk J., Zeeuwen P.L.,
An In vitro Model for Bacterial Growth on Human Stratum Corneum.
Acta Derm Venereol, Nov;96(7):873-879
# 2013
Ederveen T.H.A., Overmars L., van Hijum S.A.F.T.,
Reduce Manual Curation by Combining Gene Predictions from Multiple Annotation Engines, a Case Study of Start Codon Prediction.
PLoS One, May;8(5):e63523
# 2011
Ederveen T.H.A., Mandemaker I.K., Logie C.,
The Human Histone H3 Complement Anno 2011.
Biochim Biophys Acta, Oct;1809(10):577-86
Dissertation (PhD)
# 2019
Ederveen T.H.A., Co-Promoters: van Hijum S.A.F.T., Boekhorst J., Zeeuwen P.L., Promotor: Schalkwijk J.,
On the role of host microbiota associated with health and disease - a metagenomics survey through marker-gene sequencing and genomics approaches.
Radboud University, Nijmegen, March 28, 2019
